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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST004348
species: Oryza sativa
miRNA family: MIR393
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCAAAGGGATCGCATTGATC

miRNA*
 TCATGCGATCCTTTTGGAGG

mismatches: 0
bulges: 1
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pre-miRNA
 TGTCTTGGGGAAGCATCCAAAGGGATCGCATTGATCCTTCATCGCTCTCGCTCGCTTCCATGGCGGTCGTCGTCTACAAGCAGCTTGACGGATCATGCGA
TCCTTTTGGAGGCTTCCTCTAGCC

dot-bracket secondary structure
...((.((((((((.((((((((((((((((.(((((.(((........(((.((((....(((((...)))))...))))))).))).)))))))))))
)))))))))).)))))))).))..


SIMILARITIES
miRBase osa-MIR393: 8e-61

PMRD osa-miR393: 8e-61

microPC miR393: 7e-49		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: osa-MIR393 from miRBase (MNEST041997)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence




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